Tunable optical spatial differential operation via photonic spin Hall effect in a Weyl semimetal.

Optical differential operation is the basic principle of optical image edge detection, which has the advantages of high efficiency, simple structure and markerless compared with the traditional digital image processing methods. In this paper, we propose an optical differential operation with high contrast based on the photonic spin Hall effect in a Weyl semimetal, which enables to switch between one- and two-dimensional edge detection. Due to the unique optical and electrical properties of the Weyl semimetal, a transport model for the differential operation is established, which is closely related to the beam shifts. By tuning the incidence conditions, we effectively manipulate the in-plane and transverse shifts to switch differential operations between one and two dimensions. The contrast of the differential operation is further regulated by changing the physical parameters of the Weyl semimetal, and can be improved by two orders of magnitude compared to the conventional differentiator. This study provides new possibilities in edge detection and image processing owing to the advantages of switchable dimension and high contrast.

Theory of quantized photonic spin Hall effect in strained graphene under a sub-Tesla external magnetic field.

The quantized photonic spin Hall effect (PSHE) in the strained graphene-substrate system is predicted under a sub-Tesla external magnetic field, which is two orders of magnitude smaller than required to produce the quantized effect in the conventional graphene-substrate system. It is found that in-plane and transverse spin-dependent splittings in the PSHE, exhibit different quantized behaviors and are closely related to the reflection coefficients. Unlike the quantized PSHE in the conventional graphene-substrate system formed by the splitting of real Landau levels, the quantized PSHE in the strained graphene-substrate system is attributed to the splitting of pseudo-Landau levels caused by the pseudo-magnetic field and the lifting of valley degeneracy of the n ≠ 0 pseudo-Landau levels induced by the sub-Tesla external magnetic field. At the same time, the pseudo-Brewster angles of the system are also quantized with the change of Fermi energy. The sub-Tesla external magnetic field and the PSHE appear as quantized peak values near these angles. The giant quantized PSHE is expected to be used for direct optical measurements of the quantized conductivities and pseudo-Landau levels in the monolayer strained graphene.

Computational and experimental performance of CRISPR homing gene drive strategies with multiplexed gRNAs.

The rapid evolution of resistance alleles poses a major obstacle for genetic manipulation of populations with CRISPR homing gene drives. One proposed solution is using multiple guide RNAs (gRNAs), allowing a drive to function even if some resistant target sites are present. Here, we develop a model of homing mechanisms parameterized by experimental studies. Our model incorporates several factors affecting drives with multiple gRNAs, including timing of cleavage, reduction in homology-directed repair efficiency due to imperfect homology, Cas9 activity saturation, gRNA activity level variance, and incomplete homology-directed repair. We find that homing drives have an optimal number of gRNAs, usually between two and eight, depending on the specific drive type and performance parameters. These results contradict the notion that resistance rates can be reduced to arbitrarily low levels by gRNA multiplexing and highlight the need for combined approaches to counter resistance evolution in CRISPR homing drives.

CRISPR Gene Drive Efficiency and Resistance Rate Is Highly Heritable with No Common Genetic Loci of Large Effect.

Gene drives could allow for control of vector-borne diseases by directly suppressing vector populations or spreading genetic payloads designed to reduce pathogen transmission. Clustered regularly interspaced short palindromic repeat (CRISPR) homing gene drives work by cleaving wild-type alleles, which are then converted to drive alleles by homology-directed repair, increasing the frequency of the drive in a population over time. However, resistance alleles can form when end-joining repair takes place in lieu of homology-directed repair. Such alleles cannot be converted to drive alleles, which would eventually halt the spread of a drive through a population. To investigate the effects of natural genetic variation on resistance formation, we developed a CRISPR homing gene drive in Drosophila melanogaster and crossed it into the genetically diverse Drosophila Genetic Reference Panel (DGRP) lines, measuring several performance parameters. Most strikingly, resistance allele formation postfertilization in the early embryo ranged from 7 to 79% among lines and averaged 42 ± 18%. We performed a genome-wide association study using our results in the DGRP lines, and found that the resistance and conversion rates were not explained by common alleles of large effect, but instead there were several genetic polymorphisms showing weak association. RNA interference knockdown of several genes containing these polymorphisms confirmed their effect, but the small effect sizes imply that their manipulation would likely yield only modest improvements to the efficacy of gene drives.

Molecular safeguarding of CRISPR gene drive experiments.

CRISPR-based homing gene drives have sparked both enthusiasm and deep concerns due to their potential for genetically altering entire species. This raises the question about our ability to prevent the unintended spread of such drives from the laboratory into a natural population. Here, we experimentally demonstrate the suitability of synthetic target site drives as well as split drives as flexible safeguarding strategies for gene drive experiments by showing that their performance closely resembles that of standard homing drives in Drosophila melanogaster. Using our split drive system, we further find that maternal deposition of both Cas9 and gRNA is required to form resistance alleles in the early embryo and that maternally-deposited Cas9 alone can power germline drive conversion in individuals that lack a genomic source of Cas9.